Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
SARC rs6755757 chr2:70200634 C/G 8.02E-8 252 32.8 31.27 10.83 KM Plot
SARC rs6764949 chr3:89798001 C/G 2.39E-6 255 30.77 35.77 4.63 KM Plot
SARC rs6772076 chr3:71943330 T/C 1.82E-5 252 17.25 35.77 30.93 KM Plot
SARC rs6789027 chr3:159814623 T/C 1.6E-12 258 32.3 30.3 3.1 KM Plot
SARC rs6839250 chr4:7010313 C/T 5.2E-5 250 12.82 30.77 32.6 KM Plot
SARC rs6839624 chr4:6980415 C/T 9.68E-5 251 9.47 29.87 33.2 KM Plot
SARC rs6842493 chr4:914638 T/C 3.98E-6 247 34.9 36.53 15.93 KM Plot
SARC rs6847374 chr4:42116110 T/G 2.16E-5 257 33.9 31.27 9.87 KM Plot
SARC rs6847380 chr4:42116116 T/C 1.67E-5 257 33.18 31.98 9.87 KM Plot
SARC rs6894 chr11:70282629 A/C 3.73E-5 249 30.73 36.33 20.87 KM Plot
SARC rs6905778 chr6:150235933 A/T 2.76E-7 253 31.27 37.65 10.6 KM Plot
SARC rs6936944 chr6:150220675 G/A 5.03E-5 250 31.1 38 10.6 KM Plot
SARC rs6944579 chr7:100971604 A/G 2.03E-7 258 33.18 29.9 13.77 KM Plot
SARC rs6967879 chr7:2205909 A/C 2.46E-5 258 9.47 35.67 31.42 KM Plot
SARC rs7005248 chr8:9481551 A/C 1.97E-14 258 32.13 30.93 1.17 KM Plot